Package: rhierbaps 1.1.3

rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Authors:Gerry Tonkin-Hill [cre, aut]

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Bug tracker:https://github.com/gtonkinhill/rhierbaps/issues

On CRAN:

population-geneticspopulation-genomicspopulation-structure

4 exports 33 stars 2.64 score 34 dependencies 1 mentions 27 scripts 283 downloads

Last updated 3 years agofrom:8480ef5d27. Checks:OK: 7. Indexed: yes.

Exports:hierBAPSload_fastaplot_sub_clustersave_lml_logs

Dependencies:apeclicolorspacedigestfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr