Package: rhierbaps
Type: Package
Title: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Version: 1.1.3
Authors@R: person("Gerry", "Tonkin-Hill", email = "g.tonkinhill@gmail.com", role = c("cre", "aut"))
Description: Implements the hierarchical Bayesian analysis of
        populations structure (hierBAPS) algorithm of Cheng et al.
        (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences
        from multiple sequence alignments in FASTA format. The
        implementation includes improved defaults and plotting
        capabilities and unlike the original 'MATLAB' version removes
        singleton SNPs by default.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: ape, purrr, utils, ggplot2, matrixStats, patchwork
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown, markdown, ggtree, phytools, testthat,
        formatR
VignetteBuilder: knitr
URL: https://github.com/gtonkinhill/rhierbaps
BugReports: https://github.com/gtonkinhill/rhierbaps/issues
Repository: https://gtonkinhill.r-universe.dev
Date/Publication: 2026-02-23 05:32:54 UTC
RemoteUrl: https://github.com/gtonkinhill/rhierbaps
RemoteRef: HEAD
RemoteSha: da7f1159d9dcf5347c93684be6ed4ae5380b0544
NeedsCompilation: no
Packaged: 2026-09-21 08:31:35 UTC; root
Author: Gerry Tonkin-Hill [cre, aut]
Maintainer: Gerry Tonkin-Hill <g.tonkinhill@gmail.com>